rs229790351 SNP Detail

Summary

• ID
  rs229790351
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23719648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTACTGCG CGGGACACTT
  GAAAAGCAGA CACGCCTATC AGGATGCTTC TCGGTGGGAA GGAGGGGTAC GAGCGCGGGT
  ACGTGTGTTG CGCGTGTGCG AACGCAAGCG TACTTAAAGG CCAAAGTGCG CTACTTAGGT
  ATCTCACTTT TCCCTACGGT TACTTGCCAT GGCTCGTACT AAGCAGACCG CTCGCAAGTC
  Y
  ACCGGCGGCA AGGCCCCGCG CAAGCAGCTG GCCACCAAGG CCGCCCGCAA GAGCGCCCCG
  GCCACCGGCG GCGTGAAGAA GCCTCACCGC TACCGTCCCG GCACTGTGGC GCTGCGCGAG
  ATCCGGCGCT ACCAGAAGTC GACCGAGCTG CTGATCCGCA AGCTGCCGTT CCAGCGCCTG
  GTGCGCGAGA TCGCGCAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324289733	CHEV_13_23627347	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229790351					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23719648 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5359	CpG island 5359	5 bp distal
Gm55640	predicted gene, 55640	1224 bp upstream
Gm60769	predicted gene, 60769	1775 bp upstream
H2ac10	H2A clustered histone 10	1174 bp downstream
H3c8	H3 clustered histone 8	within coordinates
Rr403647	regulatory region 403647	1536 bp downstream
Rr403648	regulatory region 403648	41 bp downstream
Tssr4007	transcription start site region 4007	1773 bp upstream
Tssr118828	transcription start site region 118828	1596 bp downstream
Tssr118829	transcription start site region 118829	51 bp downstream
Tssr121712	transcription start site region 121712	1817 bp upstream
Tssr121713	transcription start site region 121713	259 bp upstream