rs229802064 SNP Detail

Summary

• ID
  rs229802064
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72439519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGCCGCAG CCACCCGACC
  GCTCCCTCGG GGCCCCCGCC GCGGCTTCCT GGGCCCGCGG CCCGTAGCCG CTCCGCTCCG
  CCCCGCGCGC TCCGCGCCCC CCTGCGGCCC CCGCGCCGCG CCCGCACACG CGCGTCCACG
  CCCCCCGGCC GCGCGGTAGG TGTTGTGCCG TCTGCGCCGG GCCGCAGTGC GGCTGCGCGC
  R
  CTGGGCTGCT CCGGGCTGGC AGGGCAGCAG TGGCCGCGGC GGCGGCGGGG CCGGGAGCGA
  GCGAGGGAGC GAGCGGCGTG GGGGAGCTCG GAGGCGCCAG GCCCCCGGGG GAGGGCGGCC
  GGGGAGGCAG GCCCCCCGAG AGACCCGTCG GGTTGGATTT TGGGGCCGAG GGGGCGCCCG
  ACCACGGACC TCGTTCTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378020716	MGP_WTSI_9_72380044	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229802064					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378020716	MGP_WTSI_9_72380044	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72439519 () rs orientation: forward

Symbol	Name	Function Class
4930509E16Rik	RIKEN cDNA 4930509E16 gene	379 bp upstream
Cpgi22017	CpG island 22017	within coordinates
Rfx7	regulatory factor X, 7	3 bp upstream
Rr401508	regulatory region 401508	1579 bp downstream
Rr401509	regulatory region 401509	317 bp downstream
Rr682766	regulatory region 682766	1761 bp distal
Rr682767	regulatory region 682767	1816 bp distal
Rr682768	regulatory region 682768	1260 bp distal
Rr682769	regulatory region 682769	1066 bp distal
Rr682770	regulatory region 682770	within coordinates
Rr682771	regulatory region 682771	265 bp distal
Tssr86008	transcription start site region 86008	480 bp downstream
Tssr86009	transcription start site region 86009	287 bp downstream
Tssr86010	transcription start site region 86010	30 bp downstream
Tssr86011	transcription start site region 86011	within coordinates
Tssr86012	transcription start site region 86012	550 bp upstream