rs229802301 SNP Detail

Summary

• ID
  rs229802301
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46137097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGTATC CCATAGTCCC
  TATCTGGTAT ACCCTGTCCC AACCCTGAAC CTTCCCCCAG AGGCTCCTCT CTATACAATC
  CAGACCTTTT GGCCTCCTTG TTGGGCCTCC TTCCCTTCTT TCTTTGCTCC TGTGTTCTTC
  CCTCCTCCAC CCCCATCCCC ATAGTGACTT CCCTGGTCTC AATCCTGGTA GCGGTCAGTG
  W
  ACTCACCTGA GAGCAGATTC CCAATAAACC CATTTTTAAT ATATTCTCAT CTGGCTCGAA
  TTGGCTCATT TCAGGCAACT GGAGCCAGAT GAGAATATAT TAAAATCCTT TCTTGGAGGA
  CTCTTCCAAA GTCTTACTCT GGATAATCTG TCCTCAATAG CAAAGGATGA GTGATAATTT
  GTACCACTCG CCCTTTGCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361384298	MGP_WTSI_4_46149969	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229802301					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361384298	MGP_WTSI_4_46149969	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46137097 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14246	CpG island 14246	1066 bp proximal
Ncbp1	nuclear cap binding protein subunit 1	1635 bp upstream
Rr591548	regulatory region 591548	642 bp proximal
Rr591549	regulatory region 591549	1331 bp proximal
Rr591550	regulatory region 591550	1527 bp proximal
Rr591551	regulatory region 591551	1607 bp proximal
Tssr37109	transcription start site region 37109	1387 bp upstream
Tssr37110	transcription start site region 37110	1432 bp upstream
Tssr37111	transcription start site region 37111	1480 bp upstream
Tssr37112	transcription start site region 37112	1615 bp upstream
Tssr37113	transcription start site region 37113	1724 bp upstream
Tssr41557	transcription start site region 41557	1259 bp downstream
Tssr41558	transcription start site region 41558	1301 bp downstream
Tssr41559	transcription start site region 41559	1570 bp downstream
Tstd2	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	within coordinates