rs229807346 SNP Detail

Summary

• ID
  rs229807346
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185318810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCCGAGG TGCTGTCTGT
  GAGCATGTCC CCTTAGCCAT CCACCTCTGT GAGAACCTGC TTTCTGGTCT GATTTGACTC
  TTAGCGAAGC TAAATGTTCA CGCACCGTCT TTGGCAACCG AAGACTTTAC ATTTTTGTCT
  GAAATCAGCT GTCCACATGT GTATGGATGG ATCTTTCTGT TCTCTTCTGG TGAGTCTCTT
  Y
  GGTTTGTGTT TTCTGTCTAT GGTATCCTGT TCTGCTGGTT GTTACTGGTT TGCACTGTTT
  TGAGTCATGG GGTACTTGAC TTTCAAGTTT GCTTTTTCTT CAAAGGTTAT CTCATCCTCT
  TATTCATTTG TATCACCACA TGCAATGGAG AATGAACGGT TTTTACAAAG CAGCCTTCTG
  GAATTTTGAT GGCCATTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320177551	CHEV_1_187410492	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229807346					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185318810 () rs orientation: forward

Symbol	Name	Function Class
Rr425414	regulatory region 425414	1224 bp distal
Rr425415	regulatory region 425415	1033 bp proximal