rs229810437 SNP Detail

Summary

• ID
  rs229810437
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10948253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTCTTGGG CTTGTATGTT GAGAAGCTAT
  GGCCTAGCCT CTCTAGGTTC TATGAGCATG GGTGCGTTTG AGTAACAGCA CTGGGATCCC
  TTTCCTGGTT GAACAGAGCT CAGCTGAATC CAAAGAGATT CTTTCAAACC TACTGAGTCT
  W
  AGAAACACAT CTCTGCATTG GTAAGGAACC TTGCCTCTGC CTTATTTCTT CTGCCAAAAG
  GTGGGTTAAA CATCTTCTGC AAAAGGTAGA TTGATTGCCA TACTTtgacc aaaccatctc
  agtcagtcaa caggttctcc agagcaggag                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319635028	CHEV_1_10868110	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229810437					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10948253 () rs orientation: forward

Symbol	Name	Function Class
Rr11561	regulatory region 11561	1948 bp proximal
Rr29991	regulatory region 29991	within coordinates
Rr370844	regulatory region 370844	within coordinates
Tssr5931	transcription start site region 5931	583 bp upstream