rs229812082 SNP Detail

Summary

• ID
  rs229812082
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:55480307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTTCTTAT TCCATTTCTG TTTCATCAAC
  TTTGGCCAAC TGTCCCCTTA CCTCTAGTTC TTAACCGAAA TGAAGAAATA CAAAAGGTGG
  GTCCTTTTCT TTACATTCAC CCATGACATG CAGTTTTGTT TTTAACAGTG CTAAACATTG
  R
  AGAATAGGAA AGAATCCAAG TTTGTTAATC CCGAAATCCT TTTATTCATG ACACTTTATC
  ATCTGGCTTT AACATAAATG TCCATACTTG TATTTTCCTA CTCCTTGCCT TCTCTCTCTC
  TCTCCCTGGA ATATATGTGT TGCATGgtgt                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319728627	CHEV_1_55497992	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229812082					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55480307 () rs orientation: forward

Symbol	Name	Function Class
Gm38056	predicted gene, 38056	within coordinates
Plcl1	phospholipase C-like 1	within coordinates