rs229816407 SNP Detail

Summary

• ID
  rs229816407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101674899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGATGGG GTTGAAGGAC
  TCCTTGAGAC AGACAAGAAC CCCCCGCCCC CCATGTCCCA CTTCTAATTT TAGGAAGGAA
  ACAAAACTAC TCACCTTCTG CGAGCCACGT CTCTTGGAAG TGACTGAGGT CCTGGAAGAG
  ATCTGATGGG TGAATATTGG ATTGGTGAAG AGGTGGCGAT AATATGGGGA AGAGACCTGG
  Y
  GAGCCCGGGT TACAGCCTCC CCACTGGTGA TAAGGGACGG AGAAGAATGA GTGGTTTGAC
  TTTTGGGGAA ACGTGGGTTG GGGAAGTCCA GGATAAGGCT TTGGGATGGA TGTACGTGGA
  TTAAGCAGAG GGGTCGCAGT TTGTCTGTTT CTTTACCTTC TGAGTCGGAA GGCGGCAGGG
  AGCCCGGGTC CATGAGCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384487356	MGP_WTSI_11_101645387	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229816407					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384487356	MGP_WTSI_11_101645387	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101674899 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3886	CpG island 3886	within coordinates
Etv4	ets variant 4	within coordinates
Gm71843	predicted gene, 71843	1676 bp downstream
Rr386582	regulatory region 386582	1847 bp upstream
Rr402993	regulatory region 402993	1200 bp upstream
Tssr110962	transcription start site region 110962	212 bp downstream
Tssr110963	transcription start site region 110963	249 bp downstream
Tssr110964	transcription start site region 110964	354 bp downstream
Tssr110965	transcription start site region 110965	387 bp downstream
Tssr110966	transcription start site region 110966	443 bp downstream
Tssr110967	transcription start site region 110967	535 bp downstream
Tssr110968	transcription start site region 110968	593 bp downstream
Tssr110969	transcription start site region 110969	740 bp downstream
Tssr110970	transcription start site region 110970	768 bp downstream
Tssr110971	transcription start site region 110971	1093 bp downstream
Tssr110972	transcription start site region 110972	1129 bp downstream
Tssr110973	transcription start site region 110973	1152 bp downstream
Tssr110974	transcription start site region 110974	1179 bp downstream