rs229819609 SNP Detail

Summary

• ID
  rs229819609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184269906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAAATAAAA TAAAGACACT CCTTTCTCaa
  gatggaaagc aattgaagaa gacatacaaa aattgaactc tgacctaccc acacagacat
  ttccacatac TCATACAATA CACACGGGCA CACACACATT tacatgtatg tatgtacata
  Y
  atatatatat gtatatatat atatatgtac atatgtatat atgtatatat atgtatatgc
  atatgtgtgt atatacacac ataCAGAGAG AAATTCAAAA GGGTAAACTG AACTCACTTA
  TTAAAATCTG CTTAAGAAAA TCTTAAATTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320167610	CHEV_1_186361588	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229819609					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184269906 () rs orientation: forward

Symbol	Name	Function Class
1700112H15Rik	RIKEN cDNA 1700112H15 gene	within coordinates
Gm70799	predicted gene, 70799	within coordinates
Rr425237	regulatory region 425237	1674 bp distal
Rr425238	regulatory region 425238	976 bp distal
Tssr10585	transcription start site region 10585	939 bp downstream