rs229819624 SNP Detail

Summary

• ID
  rs229819624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:59955081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGGAGAC AGTCCCTGAA
  AAAGGCTGGT ACCTACTTCC ACACCAGTCT GGTCATCTTG GCTGGCCTCA GCTATTTGGC
  CATTCTCAGC TTATTTCCCA TCTTCGGGAA AGGAGGCTCT GGGCGGACAA GCCCTGCACC
  GAGATGCTGT TGAAGAAGGG GCTAGGACTG AGCTGTCATC CTTTGCCTGC TCCCACAAAA
  R
  GCCAAGTGGG GGTGGGGGTG GGGTGGGGAG TGGCACTCAT GGCTTCCAGA GCAAGCCCTG
  AGCATTTGGG CCCTGTTGAC CTTTCTCCTG TCTGATCCTG AGCCCAAGGC CTGGGAGACA
  CTTGGCTCCT TGGGCATCCT GTGGTGCCCA AGGTGAGGAG AGCCAAGGGT TAGGGGGAAA
  GGCCAGATGG GAGAGATAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323323910	CHEV_10_59582007	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229819624					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:59955081 () rs orientation: forward

Symbol	Name	Function Class
Gm51801	predicted gene, 51801	within coordinates
Rr219869	regulatory region 219869	681 bp distal
Rr219870	regulatory region 219870	within coordinates
Rr228068	regulatory region 228068	1920 bp proximal
Spock2	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	within coordinates