rs229819942 SNP Detail

Summary

• ID
  rs229819942
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:91260960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGATGTGA AGTAGGAAAT
  CCTGCACTCG ACCCTGCATG CACCTGCCCT GAACCACATC CTCCCAGTGC CCTCACACCA
  GCCCCGCACA GGCCCTGCTC CGAGGGGGCG TCCGAGTGCT GACCATCCCC AACCTGCTCC
  CTCACTCAGA TAAATCTCTT TTACCCAAAA AAACCTGCGC CTGCTCTGGA CCCAGACCCA
  M
  GATCTGGAGA CAGAGCCGCA CACGTTTTTT TACACCTGCT TGGCGGCTTA ATTACCAGAG
  CACCTGTCGT ACAGGGTTTT TTTTTTTTTT TTCTATTAAT GAAAAGGTTT TGGTTTTAAC
  CCTTCCCTCT AGAAAACTAC ATTTAAAAAC ATCACCTGAC ATACCTACCT GAAATTGCAG
  GAGGCAGGAG GAAAGAACTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362388953	MGP_WTSI_4_91039414	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	C	A	C	A	A	A	A	A	A	C	A	C	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229819942					SNP	C	C	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	C	A	C	A	A	A	A	A	A	C	A	C	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362388953	MGP_WTSI_4_91039414	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:91260960 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14444	CpG island 14444	117 bp distal
Cpgi14445	CpG island 14445	172 bp proximal
Cpgi14446	CpG island 14446	1627 bp proximal
Elavl2	ELAV like RNA binding protein 1	within coordinates
Mir6402	microRNA 6402	561 bp downstream
Rr595258	regulatory region 595258	700 bp distal
Rr595259	regulatory region 595259	1057 bp distal
Rr595260	regulatory region 595260	164 bp distal
Rr595261	regulatory region 595261	222 bp proximal
Rr595262	regulatory region 595262	1240 bp proximal
Tssr42416	transcription start site region 42416	751 bp upstream
Tssr42417	transcription start site region 42417	723 bp upstream
Tssr42418	transcription start site region 42418	676 bp upstream