rs229823982 SNP Detail

Summary

• ID
  rs229823982
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:20781479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCTAAGC GTGCCCTGCC
  CTACGGCCAT TGGACCACGG CTGAAGGCCG GAGGGCGGTG GCCTGTCGGC GGGAAGGTGG
  GTGGGGCTGG GGAAAGGGGT GAAGGGAGGG CCCAGGTGGG CCAGGTGACA GGTGCTGGGG
  ACACTCCTGG TCGGTACCCT ACTCACTCAC CTCCTTCCGC ATCCTGGGGG ACTGTGGGGG
  Y
  GGATCAGGAG TGAGGTCGAG AGAAGGTGGA GGACTCCAAA GAGGAAGACC TGGTATGGCT
  TCTTTCAGAG AATTCCAACC TAGTGGGAGG AAAGATAGTT GCACTGTTTG GAGGAGAAGG
  AGAATGGAGG TCCAAGGCTT GTACATATTT GACCCTAAAT AAAGAAGCAG CCAGGACTCT
  AGGGGGACAG TTTGCTGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382653346	MGP_WTSI_11_20731482	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229823982					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382653346	MGP_WTSI_11_20731482	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:20781479 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2627	CpG island 2627	within coordinates
Gm12037	predicted gene 12037	within coordinates
Lgalsl	galectin like	423 bp upstream
Rr443483	regulatory region 443483	83 bp distal
Rr443484	regulatory region 443484	within coordinates
Rr443485	regulatory region 443485	453 bp proximal
Tssr3438	transcription start site region 3438	678 bp upstream
Tssr107046	transcription start site region 107046	426 bp upstream
Tssr107047	transcription start site region 107047	405 bp upstream
Tssr107048	transcription start site region 107048	290 bp upstream
Tssr107049	transcription start site region 107049	260 bp upstream
Tssr107050	transcription start site region 107050	214 bp upstream
Tssr107051	transcription start site region 107051	147 bp upstream