rs229829257 SNP Detail

Summary

• ID
  rs229829257
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11685859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCCGGTG AAGGCCTGCG
  AAGCTGCCGC CACTCGAACA CAAAGGACAG GCGAGCTGCT GCCGCGTCCC ATCCGCATCC
  GAGCGCAGCG AGCACTGAGG GCGGGACCTG AGCCACGGGG CGGAGCCTGC GCCTTGAGAG
  GGTGGGGCCT AACAGTCCGC TGCCTCCGAC CGCTGCTGAC GCCCGTGGTG GGGCGAGGCC
  M
  GCGCCTGGAT AGGGTGGGGC CTCCCGCAGG TGGTGCTGAG GCTGGCGCCT GGGATAGGGC
  GTGGCCTTGG CTGCAGGGCG GGGCCTTCTC AGGGTCTGCG CAGGAACGCC GCCTTAGGCG
  TCTGGTGGTG AAGTTAGGGG CTGGGAGGCG ATCACCGCTT GAGGAGGCCG CTACTGATGC
  CAACGCTGAA GGTGTAGGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322492728	CHEV_8_11635859	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229829257					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11685859 () rs orientation: forward

Symbol	Name	Function Class
Ankrd10	ankyrin repeat domain 10	102 bp upstream
Cpgi20087	CpG island 20087	within coordinates
Gm45592	predicted gene 45592	1423 bp upstream
Gm64331	predicted gene, 64331	within coordinates
Mir7238	microRNA 7238	123 bp upstream
Rr400761	regulatory region 400761	within coordinates
Tssr80389	transcription start site region 80389	811 bp upstream
Tssr80390	transcription start site region 80390	780 bp upstream
Tssr80391	transcription start site region 80391	214 bp upstream
Tssr80392	transcription start site region 80392	136 bp upstream
Tssr80393	transcription start site region 80393	116 bp upstream
Tssr80394	transcription start site region 80394	94 bp upstream