rs229829561 SNP Detail

Summary

• ID
  rs229829561
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24561206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGAACGA TATTGCATAA
  ATTTGTTTTT GTCATGGAGT ATATTAGTTT CTCCATCTAT GTTAATTGAG AGTTTTGTTG
  GGTGTAGTAT TTGTGTTCTT TTAGGGTCTG TATGACATCT GCCCAGCATC TTCTGGCTTT
  TATTATCTCT GGTGTGATGT CTGGTTAATT CTAATTGGTG TGCCTCTTTA CTTACTTGAC
  M
  TTTTTACCTT ACCACTTTTA ATATTCTTTC TTTGTTTTGT GCATTTGGTG TTTTGATTTT
  TATGTTATGG GAGGAATTTC TTTTCTGGTC CTGTCTATTT GGAGGTCTGT AGGCTTCTTT
  GACCTAGCCC ACTCAGTCAG TCAACAGGTG CTCCAGCGCT GAAGTGAGGA TTAAAACGAA
  ATCAGACAAT TAGACATTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324295916	CHEV_13_24469092	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229829561					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24561206 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	within coordinates
Gm11342	predicted gene 11342	1273 bp upstream
Rr476039	regulatory region 476039	1284 bp distal
Rr476040	regulatory region 476040	1130 bp distal
Tssr4016	transcription start site region 4016	1162 bp downstream
Tssr118892	transcription start site region 118892	1178 bp downstream
Tssr118893	transcription start site region 118893	1114 bp downstream
Tssr118894	transcription start site region 118894	1078 bp downstream
Tssr118895	transcription start site region 118895	1026 bp downstream
Tssr121784	transcription start site region 121784	1264 bp upstream
Tssr121785	transcription start site region 121785	1251 bp upstream
Tssr121786	transcription start site region 121786	1190 bp upstream