rs229838333 SNP Detail

Summary

• ID
  rs229838333
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13257188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGAGAGA AGAGGGGGAG
  GGGAGGGGAG AGGGGGAGGG GAAGGAGGCA GGGGTGGGGA GAGGAGTAGG AAAAGAAAAA
  GCTAGGCAGA CAACCTATTG ACAATTCCCT GGGGGACAGA AGACCTCTCT GGTTCAGAGT
  TTGGGTCACT GTGGTTCTCC ACCTCTGGAC AGCATGACCA GACAGAACAC AGCCCTGTCA
  Y
  GGAAAGCCAA AGGAAAAGCA CATTTCCCTA GCAGTCCTGT GGAAGGACTG TCATCCAGAT
  ATTCCCACCA CACACCCTGC CTCTCCTCCC ATGGCTTCAG GATAACGAGA TGATATTGTT
  TCTTTTTTCT TTTTGACTTC TACATTTCAT GTAAATGTAT GCCTATCTCA ATTAGGTTTT
  GACAGTTCTT GGGGAATATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505100	CHEV_8_13207188	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229838333					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13257188 () rs orientation: forward

Symbol	Name	Function Class
Rr381722	regulatory region 381722	276 bp upstream
Rr659880	regulatory region 659880	1890 bp distal
Rr659881	regulatory region 659881	417 bp distal
Rr659882	regulatory region 659882	1193 bp proximal
Rr659883	regulatory region 659883	1454 bp proximal
Rr659884	regulatory region 659884	1574 bp proximal