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rs229842698 SNP Detail
Summary
  • ID
    rs229842698
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:149982621 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGAAGGGTTC CCAATTAAAG
ATCACATTCA GGGTTAAACT TCCAAAGGAG ACATCCTGAT CCTGGTTTTG TGCTGGCCTG
GTACTCAGTA GGTTTTTGCT GTGAGGTTAA AGACTTGCCA GGCTGAACTT CGAAACAGTT
TTTCTGTTGC ACAGTATGAT GTAACAGTCC ATCTCTCAAT GCAATAGGTA TCAGTGGCCT
Y
GTGAGCTTCT TCACAATATT GATATGTCTT CCAGCCCATT GAACCTGGAC TGCAGAAGGC
CCCATGTCAT GTGTGAGCTC AGCCTGGATG CCAGCATTGC TGCTCCTCTT AGTTCCGTTT
CTCGTGGTCA CTTTACTACG AGAAACGCTG ATTGGGTTTT CGTAGCTGTG TTCCAGGTTT
TTAGTATCAG AACTATTCTT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss351888782 MGP_WTSI_1_151954000 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229842698 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss351888782 MGP_WTSI_1_151954000 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:149982621 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ptgs2 prostaglandin-endoperoxide synthase 2 within coordinates
Tssr9267 transcription start site region 9267 1872 bp downstream
Tssr9268 transcription start site region 9268 1802 bp downstream
Tssr9269 transcription start site region 9269 1465 bp downstream
Tssr9270 transcription start site region 9270 1434 bp downstream
Tssr9271 transcription start site region 9271 1411 bp downstream
Tssr9272 transcription start site region 9272 1380 bp downstream
Tssr9273 transcription start site region 9273 1336 bp downstream
Tssr9274 transcription start site region 9274 1316 bp downstream
Tssr9275 transcription start site region 9275 1284 bp downstream
Tssr9276 transcription start site region 9276 1270 bp downstream
Tssr9277 transcription start site region 9277 1214 bp downstream
Tssr9278 transcription start site region 9278 1193 bp downstream
Tssr9279 transcription start site region 9279 1175 bp downstream
Tssr9280 transcription start site region 9280 1075 bp downstream
Tssr9281 transcription start site region 9281 1055 bp downstream
Tssr9282 transcription start site region 9282 1021 bp downstream
Tssr9283 transcription start site region 9283 1006 bp downstream
Tssr9284 transcription start site region 9284 994 bp downstream
Tssr9285 transcription start site region 9285 980 bp downstream
Tssr9286 transcription start site region 9286 901 bp downstream
Tssr9287 transcription start site region 9287 385 bp downstream
Tssr9288 transcription start site region 9288 271 bp downstream
Tssr9289 transcription start site region 9289 254 bp downstream
Tssr9290 transcription start site region 9290 100 bp downstream
Tssr9291 transcription start site region 9291 52 bp downstream
Tssr9292 transcription start site region 9292 60 bp upstream
Tssr9293 transcription start site region 9293 89 bp upstream
Tssr9294 transcription start site region 9294 109 bp upstream
Tssr9295 transcription start site region 9295 125 bp upstream
Tssr9296 transcription start site region 9296 147 bp upstream
Tssr9297 transcription start site region 9297 156 bp upstream
Tssr9298 transcription start site region 9298 182 bp upstream
Tssr9299 transcription start site region 9299 204 bp upstream
Tssr9300 transcription start site region 9300 221 bp upstream
Tssr9301 transcription start site region 9301 355 bp upstream
Tssr9302 transcription start site region 9302 385 bp upstream
Tssr9303 transcription start site region 9303 447 bp upstream
Tssr9304 transcription start site region 9304 471 bp upstream
Tssr9305 transcription start site region 9305 489 bp upstream
Tssr9306 transcription start site region 9306 501 bp upstream
Tssr9307 transcription start site region 9307 505 bp upstream
Tssr9308 transcription start site region 9308 538 bp upstream
Tssr9309 transcription start site region 9309 552 bp upstream
Tssr9310 transcription start site region 9310 583 bp upstream
Tssr9311 transcription start site region 9311 595 bp upstream
Tssr9312 transcription start site region 9312 620 bp upstream
Tssr9313 transcription start site region 9313 640 bp upstream
Tssr9314 transcription start site region 9314 651 bp upstream
Tssr9315 transcription start site region 9315 745 bp upstream
Tssr9316 transcription start site region 9316 928 bp upstream
Tssr9317 transcription start site region 9317 1205 bp upstream
Tssr9318 transcription start site region 9318 1934 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory