rs229844146 SNP Detail

Summary

• ID
  rs229844146
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57530478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTCTTGG TGGCCTGCCG
  TGATTCTGGG AGAGTGTCCT TCTTGGTGCG GACCTAGGTG AGGAATCCAG AGAGAGAGGC
  ACGGTGGTTC CCAGAGCTGC CCAGGTTGGG GTGCTCACAA CAGGGTCTGT GATGGTTAAT
  ACTGCTGGAC AGCTTGATAG TGTCTAAAAT CAGTCAGGCG ATGAGCGCTG GCCATGCCGG
  Y
  GAGGGGGGTT TTAGATTAGG TTGAACGTGT GGGTGGCACG GTTCTCCCCT GAGATAATGG
  ACTGGACTGA ATAAAAAGGA GGAAGTGAAC TAAACACTCA GTGCTCATTC ATCTTTGCTG
  GTAGGGTGTG AAAAAGATGC CGTATGCTCC TGCTGCTGTG CCTGCCAGCC ACGCAGGACA
  GTCACCTCCC ACTGTGAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398573172	MGP_WTSI_17_57362901	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229844146					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398573172	MGP_WTSI_17_57362901	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57530478 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Cpgi9399	CpG island 9399	844 bp proximal
Gm65552	predicted gene, 65552	1968 bp downstream
Tssr145377	transcription start site region 145377	1247 bp downstream
Tssr145378	transcription start site region 145378	343 bp downstream
Tssr145379	transcription start site region 145379	268 bp downstream
Tssr145380	transcription start site region 145380	223 bp downstream
Tssr145381	transcription start site region 145381	169 bp downstream
Tssr145382	transcription start site region 145382	340 bp upstream
Tssr145383	transcription start site region 145383	456 bp upstream
Tssr145384	transcription start site region 145384	589 bp upstream
Tssr145385	transcription start site region 145385	1771 bp upstream
Tssr148939	transcription start site region 148939	1549 bp upstream
Tssr148940	transcription start site region 148940	1205 bp upstream
Tssr148941	transcription start site region 148941	1132 bp upstream
Tssr148942	transcription start site region 148942	632 bp upstream
Tssr148943	transcription start site region 148943	592 bp upstream
Tssr148944	transcription start site region 148944	578 bp upstream
Tssr148945	transcription start site region 148945	541 bp upstream
Tssr148946	transcription start site region 148946	529 bp upstream
Tssr148947	transcription start site region 148947	279 bp upstream
Tssr148948	transcription start site region 148948	195 bp upstream
Tssr148949	transcription start site region 148949	139 bp upstream
Tssr148950	transcription start site region 148950	377 bp downstream
Tssr148951	transcription start site region 148951	418 bp downstream
Tssr148952	transcription start site region 148952	459 bp downstream
Tssr148953	transcription start site region 148953	643 bp downstream
Tssr148954	transcription start site region 148954	694 bp downstream
Tssr148955	transcription start site region 148955	841 bp downstream
Tssr148956	transcription start site region 148956	874 bp downstream
Tssr148957	transcription start site region 148957	1402 bp downstream
Tssr148958	transcription start site region 148958	1625 bp downstream
Tssr148959	transcription start site region 148959	1785 bp downstream