rs229846755 SNP Detail

Summary

• ID
  rs229846755
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107148929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGCAGCA AGTGGGACAC
  ACAACCTGTG GTATTATTCA AACAGATTCA ACCACGATGC CATTTTTCTC AAAGCATTTT
  GTAAAAATGG GGTTCTCGCC TGCAGACGTC AGCAGCCATC CGTGAACAGT GAGAGGAAGG
  TCCCTGTGGA CCTGGACCTC GGGCCTAGAG CCAGAGCCCC ACAGGCAGAC ACACTGACTT
  Y
  TGAACCAGAC TTCTCGCTGG CGTCATGACT TTGGGAATAT TGCTAATCCT CAGAGCCCCA
  GTGTTCTAAG GGCCTCCAGA TCCCACCACC CTCCATAGCT CCTTCCCAGA ACACACAATT
  ACCACGAGGA AACTGTAACC AGGAAATCTT ATAAAGCAGT GGTATTGGCT GAACGAGTCT
  CCTTCCTCTT AGCTGCCGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320864903	CHEV_3_107044531	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229846755					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107148929 () rs orientation: forward

Symbol	Name	Function Class
Gm66085	predicted gene, 66085	253 bp upstream
Prok1	prokineticin 1	1906 bp upstream
Rr582947	regulatory region 582947	within coordinates
Rr582948	regulatory region 582948	264 bp proximal
Tssr31192	transcription start site region 31192	176 bp upstream
Tssr31193	transcription start site region 31193	247 bp upstream
Tssr31194	transcription start site region 31194	302 bp upstream