rs229858835 SNP Detail

Summary

• ID
  rs229858835
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:86586430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGAGTATAG GGTTGTTGTT
  GTTGTTTGTT TGTTTGTTTG TTTGTTTTTC CTTTTTGAGA CACTGTCTCA TACAGCCCAG
  GCAGCCTGCA GTTCACTATG TAGCCATGGT CTGCCTTCAA CTGACACCTC TTCACCTCCC
  TTCAAAGTGC TGGGGTGTGA GCACCACGCC TGGCTGGGAA GTTTCTATTA GAGTAATAAG
  W
  GTGAGCACCG GTATGGCTGT GAAGAGCCCA TCCGTGTGAA GGAAGGTCAG CAGACAGTTT
  CTGGGTAGAG GAGGGATTGT GCTTCAGGAA GGCCTGGGGG ATCCCTGGTG TGACTTAGCA
  CTCACCCTAC CCAGTCCCTT GGGCTCAGTG TTGACCGCAG AATCTAGACT CACTTTGTGG
  CTCCAGCTTC TGGATGATGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362287665	MGP_WTSI_4_86314097	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229858835					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362287665	MGP_WTSI_4_86314097	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:86586430 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14420	CpG island 14420	1716 bp proximal
Plin2	perilipin 2	within coordinates
Rr594783	regulatory region 594783	532 bp proximal
Rr594784	regulatory region 594784	871 bp proximal
Rr594785	regulatory region 594785	1857 bp proximal
Tssr37738	transcription start site region 37738	2000 bp upstream
Tssr42335	transcription start site region 42335	294 bp downstream
Tssr42336	transcription start site region 42336	509 bp downstream
Tssr42337	transcription start site region 42337	1257 bp downstream
Tssr42338	transcription start site region 42338	1279 bp downstream
Tssr42339	transcription start site region 42339	1299 bp downstream
Tssr42340	transcription start site region 42340	1793 bp downstream
Tssr42341	transcription start site region 42341	1837 bp downstream