rs229860665 SNP Detail

Summary

• ID
  rs229860665
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:18678912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACTTGAA ACAGATCGAC
  CCAGTGGTTT TAAAGCATTG TCATGCAGCA GCTGCAACTT GCATCCTGGA GGCAGGAAAG
  CACCAAGTTG ACAAGTCTAC TCTAAGGTAC AGACTTTATC TAATGCCCGC TTACTTTGAA
  GTGGTATCTT TGTCATTGTA ATTTCAGTTT TTAAAGATAG AGACTAAACC TTGCTTTATT
  Y
  CCCCCCCCTC CTGCCCCCTT CAGCACTTAT TTAGAAGACT GTAAATTTGA CCGAGAGCGA
  ATAGAACTGT TTTGCACCGA GTATCAGGTT ACTTACTTTA AACTTTTAAA TTAACAATTA
  GTACCCACCC CCTTTTTTCC TGCTGTTTGC AAAACTGTGT TTTCTTTCTC CTTCCCCAGA
  ACAATAAGAA TTCTCTAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353255577	MGP_WTSI_2_18595728	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229860665					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353255577	MGP_WTSI_2_18595728	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:18678912 () rs orientation: forward

Symbol	Name	Function Class
Commd3	COMM domain containing 3	within coordinates
Cpgi11239	CpG island 11239	1007 bp distal
Rr372858	regulatory region 372858	687 bp downstream
Rr552336	regulatory region 552336	1727 bp distal
Rr552337	regulatory region 552337	1668 bp distal
Rr552338	regulatory region 552338	1530 bp proximal
Tssr411	transcription start site region 411	1833 bp downstream
Tssr16385	transcription start site region 16385	1619 bp downstream
Tssr16386	transcription start site region 16386	1597 bp downstream