rs229864759 SNP Detail

Summary

• ID
  rs229864759
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:107438192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAACTCC AATCCCGCCT
  TGCTTCTTCC ATTGTCCAAT CACAGGCTCT AGACTTTTAT TGACCAGTTA AATTGGGGAG
  AAGAGTCACA AGGCATCACT TGACTATGTG AGTATCTGCT CACTGGGGAC AACCACATCT
  TGAGGAACCA GTTTTAGCAT TAGGATACAA GCAACATCAG ACTGACCCCA CTACAGGATG
  Y
  AGTGTTTCTG CAGTTTTGGG GCTCTCAAAT GCTGGAAAAT GTTTGTGAAG TACCTGGTGG
  CTGATTCTAG GCTCTTGACT TTCCTACTGT TTATGAGCTC CAGAGGCTGC CTTGAACGGG
  TGTCTGAGGT CCTACCAAAC TGTCTTCACT TTGCTTTCTT TGGTACCAGA GACCTCTGCT
  GGCCTCAAAG AGATTTGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322381897	CHEV_7_114982499	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229864759					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:107438192 () rs orientation: forward

Symbol	Name	Function Class
Gm5002	predicted gene 5002	1526 bp downstream
Rr163004	regulatory region 163004	1582 bp distal
Rr381269	regulatory region 381269	1368 bp upstream