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rs229866492 SNP Detail
Summary
  • ID
    rs229866492
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr12:8059289 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGGGAACTGG AGCACTTCTT
GTCTCTGGTA AACCAAGTTT ACAGTACACT GGTCACCTAT ATGTCTGACT GGTGGACTCT
GACTGCTAAA AACATAACAG ACTTTGCAGA GCAATATTCC ATCCAAAACT GGGCTGAGAG
TATAAAAGTA CTGGTGGAAC AAGGATTCAT AGTTCCTGAA ATGCAAACAT TTCTGTGGAC
Y
ATGCCTGCTT TTGAGGTCAG TCTCCGTGCT CTCCAAGAAG GTAACTTTCA GACCCCTGTC
TTTATAGTCC CCTTGACAGA TTTGAGGATT CCATCAATTC GGATAAACTT TAAAATGTTA
AAGAATATAA AAATCCCATT GAGATTTTCC ACTCCAGAAT TCACTCTTCT CAACACCTTC
CATGTCCATT CCTTTACAAT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss385064693 MGP_WTSI_12_8016095 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229866492 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss385064693 MGP_WTSI_12_8016095 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:8059289 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apob apolipoprotein B within coordinates
Tssr3782 transcription start site region 3782 577 bp downstream
Tssr112636 transcription start site region 112636 1857 bp downstream
Tssr112637 transcription start site region 112637 1777 bp downstream
Tssr112638 transcription start site region 112638 1712 bp downstream
Tssr112639 transcription start site region 112639 1470 bp downstream
Tssr112640 transcription start site region 112640 1428 bp downstream
Tssr112641 transcription start site region 112641 1376 bp downstream
Tssr112642 transcription start site region 112642 1302 bp downstream
Tssr112643 transcription start site region 112643 1213 bp downstream
Tssr112644 transcription start site region 112644 999 bp downstream
Tssr112645 transcription start site region 112645 897 bp downstream
Tssr112646 transcription start site region 112646 868 bp downstream
Tssr112647 transcription start site region 112647 696 bp downstream
Tssr112648 transcription start site region 112648 674 bp downstream
Tssr112649 transcription start site region 112649 192 bp downstream
Tssr112650 transcription start site region 112650 112 bp downstream
Tssr112651 transcription start site region 112651 60 bp downstream
Tssr112652 transcription start site region 112652 30 bp downstream
Tssr112653 transcription start site region 112653 11 bp downstream
Tssr112654 transcription start site region 112654 within coordinates
Tssr112655 transcription start site region 112655 12 bp upstream
Tssr112656 transcription start site region 112656 34 bp upstream
Tssr112657 transcription start site region 112657 49 bp upstream
Tssr112658 transcription start site region 112658 82 bp upstream
Tssr112659 transcription start site region 112659 135 bp upstream
Tssr112660 transcription start site region 112660 287 bp upstream
Tssr112661 transcription start site region 112661 518 bp upstream
Tssr112662 transcription start site region 112662 762 bp upstream
Tssr112663 transcription start site region 112663 997 bp upstream
Tssr112664 transcription start site region 112664 1022 bp upstream
Tssr112665 transcription start site region 112665 1187 bp upstream
Tssr112666 transcription start site region 112666 1196 bp upstream
Tssr112667 transcription start site region 112667 1243 bp upstream
Tssr112668 transcription start site region 112668 1381 bp upstream
Tssr112669 transcription start site region 112669 1466 bp upstream
Tssr112670 transcription start site region 112670 1519 bp upstream
Tssr112671 transcription start site region 112671 1634 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory