rs229869788 SNP Detail

Summary

• ID
  rs229869788
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27995985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    actgccatc cttagctact tggtgagttc
  aaggccagcc tgggctaaat aagcttttgt atcaaTATCC CTCTCACTGC CAAAAAGGAA
  AAACTACTAC tgatgcaggg tatctgatca caccataaac cctgactgtg ttatttactg
  M
  aaaaacctat ctgttgtggt atggcctagc ccttagtaca cacccttcct cccaaacaag
  gaagataaag tcactttgta gaagaaagca cctgtgtttg aaagtggtgt ctcattgtgt
  ggcagacaaa gtgatgattt agagaaagat                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325349536	CHEV_17_27913956	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229869788					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27995985 () rs orientation: forward

Symbol	Name	Function Class
Ilrun	inflammation and lipid regulator with UBA-like and NBR1-like domains	within coordinates
Rr340954	regulatory region 340954	within coordinates
Tssr147065	transcription start site region 147065	926 bp downstream