rs229871887 SNP Detail

Summary

• ID
  rs229871887
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58420743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTACGAA TTACAAAATG
  AGAGGAAAAG GAATGGCCTG GTCTCCCTCA TCTTCTTGGC TGCTTGACTG TCATTTTGAC
  TTCTTAGAAC TTAAGGTTAC AGGGATCGAG GACCAACGGT CCTGAAACTT TTGCTTCCAA
  CACACTTATC GAAAATGACA TAAACTTAAA GGCATACCCG GAGCTCCACC ACCCCCCCCC
  A
  CCCCCCCCCC CCCCGCAACA CACACACTGG TTAGGTGCAG CCTTCCTTTT CTAATCCGAA
  GCTCTCAACT TCTGTGGGTT GTGAACTCTT AGAAACAAAA ACAAAAAGCA AACTGCAGAC
  ATGTACTAAG GAATTCAGTC ATGAAGTGCA AAGGTGATTT TCACTTGCAC ACAACGTCCC
  TCTGATCCAC GTGTAGGTTC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	LG/J	MA/MyJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	RF/J	SM/J	SPRET/EiJ	SWR/J
ss388759131	MGP_WTSI_13_58374290	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	LG/J	MA/MyJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	RF/J	SM/J	SPRET/EiJ	SWR/J
rs229871887					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388759131	MGP_WTSI_13_58374290	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58420743 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5724	CpG island 5724	422 bp proximal
Gkap1	G kinase anchoring protein 1	within coordinates
Rr276751	regulatory region 276751	943 bp distal
Rr281488	regulatory region 281488	57 bp proximal
Rr388493	regulatory region 388493	1527 bp downstream
Tssr120072	transcription start site region 120072	1323 bp upstream
Tssr122822	transcription start site region 122822	1004 bp upstream
Tssr122823	transcription start site region 122823	1167 bp downstream
Tssr122824	transcription start site region 122824	1192 bp downstream
Tssr122825	transcription start site region 122825	1334 bp downstream
Tssr122826	transcription start site region 122826	1411 bp downstream
Tssr122827	transcription start site region 122827	1438 bp downstream
Tssr122828	transcription start site region 122828	1532 bp downstream
Tssr122829	transcription start site region 122829	1575 bp downstream
Tssr122830	transcription start site region 122830	1904 bp downstream