rs229872245 SNP Detail

Summary

• ID
  rs229872245
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74317725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGTTGGCA ACTGAAAAAA ATCTGTATCA
  GAAAAAAAAG GTATGGCTCA GAGTCTGAGT CCAAAGCCTC AGTGATAATG TGCTGTCCCC
  ACCTGGGCAG TGACTGCAGG ACCAACCTAA CTCTGGCCAC TCCTCCATCC AGGCATGCTT
  K
  CTGCAGCTCC GGACCCTCCA TGTGCCAAGA CCCATGATGA CACCCAACAG CACTGAGCTG
  TCGGCCATTC CCATGGGGGT TCTGGGGCTT TCCTTGGCCC TGGCAAGCCT CATCGTCATC
  GCCAACCTGC TCCTGGCCCT AGGCATCGCC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319794415	CHEV_1_74325140	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229872245					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74317725 () rs orientation: forward

Symbol	Name	Function Class
Aamp	angio-associated migratory protein	1274 bp downstream
Gpbar1	G protein-coupled bile acid receptor 1	within coordinates
Rr17376	regulatory region 17376	676 bp proximal
Tssr7370	transcription start site region 7370	1446 bp downstream