rs229872342 SNP Detail

Summary

• ID
  rs229872342
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:56483995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAG TGTCAACTAA CCTGGATCCC
  K
  GGGAGCTCCC AGAGAATGAG CCACC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320777358	CHEV_3_56380496	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229872342					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:56483995 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13194	CpG island 13194	847 bp distal
Rr577050	regulatory region 577050	807 bp distal
Tssr29179	transcription start site region 29179	1037 bp downstream
Tssr29180	transcription start site region 29180	901 bp downstream
Tssr29181	transcription start site region 29181	873 bp downstream