rs229877022 SNP Detail

Summary

• ID
  rs229877022
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115151736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGGAGTCG GCGGCGGGCG
  AGCCTGGGCC TGTTTCCGCG TCCGCACGAA CCGGCTCAGC ATCCCGGGAA TCCTGCGGTG
  GGAAGGAGCT GATCTTTGCG ATCTGACCCC ACTCTGATGG AATAGAATAC AGGACATGAT
  CGCCCGGCCC GAGGAATGGT CCCAAAGCGG ATAGCCATCA CACCAGGGGT CATCACACGC
  M
  AAGTCCGGCC AAGGTGCCCT TGAGTCTCTT TCTCTGGGCG CACAAATCCG GGCTCATGAA
  CTTTACAGTT CGTCCACACG GCCAGGTCCT CGAGTCATCG TCCAGGTCTC AGCTTAAACC
  GGAAAGGCTT CCCTGACCAC CCAGACCTTC CCACATCCTT CCATCCCTCT TACTCACTTC
  CTCACCGAGA TATTTCCTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484110	CHEV_10_114752887	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229877022					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115151736 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2204	CpG island 2204	within coordinates
Gm10752	predicted gene 10752	within coordinates
Gm67120	predicted gene, 67120	within coordinates
Rab21	RAB21, member RAS oncogene family	196 bp upstream
Rr402237	regulatory region 402237	66 bp downstream
Rr402238	regulatory region 402238	329 bp upstream
Rr439193	regulatory region 439193	242 bp distal
Rr439194	regulatory region 439194	192 bp distal
Rr439195	regulatory region 439195	within coordinates
Rr439196	regulatory region 439196	4 bp distal
Rr439197	regulatory region 439197	1699 bp proximal
Rr439198	regulatory region 439198	1840 bp proximal
Tssr95806	transcription start site region 95806	777 bp downstream
Tssr95807	transcription start site region 95807	737 bp downstream
Tssr95808	transcription start site region 95808	161 bp downstream
Tssr95809	transcription start site region 95809	137 bp downstream
Tssr99318	transcription start site region 99318	944 bp upstream
Tssr99319	transcription start site region 99319	901 bp upstream
Tssr99320	transcription start site region 99320	309 bp upstream
Tssr99321	transcription start site region 99321	216 bp upstream
Tssr99322	transcription start site region 99322	207 bp upstream