rs229877296 SNP Detail

Summary

• ID
  rs229877296
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135043124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGACCACC AATCCATATT
  GGAAATAGAA AAATACTTTT GAGATTTTGA GCATCTCTTT TGTTGTTGTT TATTTGTTTT
  TGGTTTTCTC TGTATAGCCC TGGCTGTCCT GGACCTCACT CTGTAGACCA GGCTGGCCTC
  GAACTCAGAA ATCTGCCTCC CAAGGGATTC TACTAGGCAG GGGCTCTACC ACTGAGCCAC
  R
  CCCCCAGCCT CTCACTGGGG GATTCTAGGC AGATGCTCTA CCATTGAGCC ATACCCCAGC
  CCATAATATA GCATTTTGTA TAAGGGACTT GAGCATCTCA GCATCCTAAG ATTGGATAAT
  GGTAGAGAGG TTTTTGTTTT TTGTTTTTTG TTTTGTGTGG CCTTAGCTAT CCTCTGTAGA
  CCAGGTTGAC CTTGAATTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366824649	MGP_WTSI_5_135490140	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229877296					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366824649	MGP_WTSI_5_135490140	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135043124 () rs orientation: forward

Symbol	Name	Function Class
Abhd11os	abhydrolase domain containing 11, opposite strand	1482 bp upstream
Gm73578	predicted gene, 73578	868 bp upstream
Rr110217	regulatory region 110217	1324 bp distal
Rr110218	regulatory region 110218	324 bp distal
Rr110219	regulatory region 110219	677 bp proximal
Rr124504	regulatory region 124504	923 bp distal
Tssr1662	transcription start site region 1662	1533 bp upstream
Tssr1663	transcription start site region 1663	1100 bp upstream
Tssr1664	transcription start site region 1664	1066 bp upstream
Tssr53717	transcription start site region 53717	1509 bp upstream
Tssr53718	transcription start site region 53718	1462 bp upstream
Tssr53719	transcription start site region 53719	1447 bp upstream
Tssr53720	transcription start site region 53720	1402 bp upstream
Tssr53721	transcription start site region 53721	1145 bp upstream
Tssr53722	transcription start site region 53722	1112 bp upstream