rs229884780 SNP Detail

Summary

• ID
  rs229884780
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84924996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTAACTAC TCATCCCCGG
  GGCCACTCCT GTGTGTCACC TATCCCAACT GGTAGCTACC TATCCTTGAG GCCACTACTG
  TGTCACCCAC CTCAACAGAG CCCTGGTAAC TACCCACCTT GGGGCCATGA ATGGCAACCC
  AACCCTGTAG CGACTCTGGC AACACTGTTC ATCTCCAGGG GACCCCTCTA AGTGGCAAAT
  K
  GCAGGCCATA CTGCCCTACA CTAGGCCCCA TACCGGCAGC TGAATGACAG AGCTGGGCGC
  CCTCCCCGGA TGCGGGGGAG CGGCAGTGCC CCAGCGAGGG GGCAGGGATC TGGTGGGCCC
  GGGACAGTCC ACAACACAGT CGGTCGCCAC GGCGACAGGA GGCGGGCTGC CTGACGGCCT
  GAGGCGCTAG CCGCCAGCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375393368	MGP_WTSI_8_86722266	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229884780					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375393368	MGP_WTSI_8_86722266	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84924996 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20681	CpG island 20681	294 bp distal
Cpgi20682	CpG island 20682	within coordinates
Cpgi20683	CpG island 20683	1775 bp proximal
Gm26887	predicted gene, 26887	within coordinates
Gm56830	predicted gene, 56830	within coordinates
Gm56836	predicted gene, 56836	within coordinates
Gm64014	predicted gene, 64014	1610 bp downstream
Rr178127	regulatory region 178127	1996 bp distal
Rr186982	regulatory region 186982	within coordinates
Rr186983	regulatory region 186983	1404 bp proximal
Rr368563	regulatory region 368563	808 bp downstream
Tssr2623	transcription start site region 2623	889 bp upstream
Tssr2624	transcription start site region 2624	396 bp upstream
Tssr78371	transcription start site region 78371	951 bp downstream
Tssr82076	transcription start site region 82076	774 bp upstream
Tssr82077	transcription start site region 82077	687 bp upstream
Tssr82078	transcription start site region 82078	408 bp upstream
Tssr82079	transcription start site region 82079	3 bp upstream
Tssr82080	transcription start site region 82080	1 bp downstream
Tssr82081	transcription start site region 82081	36 bp downstream