rs229884880 SNP Detail

Summary

• ID
  rs229884880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:33596420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGGGGGG GGGCAAGTTA
  AATCCCAGCG TTAATGCAGC AGGAGCGAAA TGACACAATT TTTCCAAGGT GTCAGCTTTA
  GCTCTAAAAT TTAGAGGGAG AAAGCATGTA CTCTCTGCAA GGTTGAAGGG TCCAGCTAAG
  AGCAAAGGCA AGGAACCACA CAAAAGAGAA AGCAGCGCTC CCAGCTGGGG ATGAGAATGG
  Y
  ATATACTTAC AGACAAAAGC CCCGCTCCCT GTTCACTCTC TGCTTTCTAC ACCTGAAACA
  CAAATGTGGA TGAAAAAGGG CATCATGCTA GAAAGACAGC TGAGGGGGAG GGGGAGGGGG
  AGGGGAAAGG GGTGGAGGAA GAGGAGGGCG GAGGGGGGAA GGGAAACAAA ACCCCAGCCC
  GCTTCACTTC CAAGAAGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325579797	CHEV_18_33623021	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229884880					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:33596420 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9808	CpG island 9808	136 bp proximal
Gm10549	predicted gene 10549	796 bp upstream
Nrep	neuronal regeneration related protein	within coordinates
Rr352671	regulatory region 352671	within coordinates
Tssr152760	transcription start site region 152760	823 bp upstream
Tssr152761	transcription start site region 152761	48 bp downstream
Tssr152762	transcription start site region 152762	83 bp downstream
Tssr152763	transcription start site region 152763	248 bp downstream
Tssr152764	transcription start site region 152764	275 bp downstream
Tssr152765	transcription start site region 152765	396 bp downstream
Tssr152766	transcription start site region 152766	454 bp downstream
Tssr152767	transcription start site region 152767	491 bp downstream
Tssr152768	transcription start site region 152768	640 bp downstream
Tssr152769	transcription start site region 152769	998 bp downstream