rs229894584 SNP Detail

Summary

• ID
  rs229894584
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112687231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACGTTTAT AAGCATCCAT
  TACTAAGGAG TGAGCAAGGG GTAGCTAAGC TAAGACAGCG AAGCCGCTGG GGAAAGGGCT
  GTTTACAGAG CCAAGAGAAT GGGAGAGCCC GGCTCGGGAG TTGGGACTCA GAAACAGGAC
  AGTCTCAGTC TACTAGGAAG AAACTGCAAA ATCCCCATAC AGCTCCCGGA AGCTGAGACC
  R
  GGGCTAACAA CCCTGGCAAG GACAAATGGG CTAGGAAGAC AGGAACGTAC CCAGCCCTCC
  TCTTTCCAGT ACCTGACAAG TCTCCTCTGC CTCCATCTCT TCCAGTTCCT GGCCTCTCCC
  TGGAGTCCTG GCCTCCCCCT CAAAGTACTC CCGTTTGCCC ACAAAGACAT CTAGAGCTCT
  CTCCAAGGCC TTCATCTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387391314	MGP_WTSI_12_113959008	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229894584					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387391314	MGP_WTSI_12_113959008	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112687231 () rs orientation: forward

Symbol	Name	Function Class
Cep170b	centrosomal protein 170B	719 bp upstream
Cpgi5179	CpG island 5179	463 bp proximal
Gm46382	predicted gene, 46382	within coordinates
Gm59466	predicted gene, 59466	within coordinates
Rr473583	regulatory region 473583	within coordinates
Rr473584	regulatory region 473584	896 bp proximal
Rr473585	regulatory region 473585	1230 bp proximal
Rr473586	regulatory region 473586	1408 bp proximal
Tssr115398	transcription start site region 115398	1541 bp downstream
Tssr115399	transcription start site region 115399	308 bp upstream
Tssr115400	transcription start site region 115400	707 bp upstream
Tssr115401	transcription start site region 115401	1032 bp upstream
Tssr115402	transcription start site region 115402	1366 bp upstream
Tssr115403	transcription start site region 115403	1713 bp upstream
Tssr115404	transcription start site region 115404	1998 bp upstream
Tssr117886	transcription start site region 117886	895 bp downstream
Tssr117887	transcription start site region 117887	933 bp downstream
Tssr117888	transcription start site region 117888	963 bp downstream