rs229899928 SNP Detail

Summary

• ID
  rs229899928
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151858219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTCTTTC CACAGACGCA
  CGGAGATTAT AGGCACGCTA TCTACCCAGC TTTATGTGAG TCCTGGAAAT CTAAACTTGG
  GGCCTCTCAC TGAGACACCA CTGCTTTACC TGATGAACCA TCTCCCAGGC CTAGAAAGGA
  GCCACTGGGT CTAGGGTAGT TCATCCCAGC CACCCAGACA GTTTGGCCCA GGCTACCTGA
  S
  TGTCTCTATC TCTTGTATAG CATACCTACT GCAGGCTGCA GATAGCTGGA GAAGTGAGGA
  GAAGTGAGGG CTGGCCATCT AATCAGCTCC TTCAGGCTAA GCCCAACACT GCTCTCATCT
  CTGTGCTTGC ATGTGTGTGT GTTTGTGTGT GTGTGTGTAT GAGTGTGTGT GCATGTACCA
  TAGCAGGAAC ATGGAAGGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028255	CHEV_3_151815546	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229899928					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151858219 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm16198	predicted gene 16198			865 bp upstream
Gm64753	predicted gene, 64753			within coordinates
Rr587469	regulatory region 587469			257 bp distal
Rr587470	regulatory region 587470			within coordinates