rs229904004 SNP Detail

Summary

• ID
  rs229904004
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:44510554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTG GCAAGACAGG TCTTTTATTT
  W
  AAAAAAAAAT TAACCAAACA ACAAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss642755414	FVB_NJ_11_44433229	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	T	A	A	T	A	A	A	A	A	T	T	A	A	T	A	A	T	A	A	T	A	A	A	A	A	T	A	A	A	T	A	A	A	T	A	T	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229904004					SNP	A	A	A	A	A	T	A	A	T	A	A	A	A	A	T	T	A	A	T	A	A	T	A	A	T	A	A	A	A	A	T	A	A	A	T	A	A	A	T	A	T	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss642755414	FVB_NJ_11_44433229	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44510554 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2763	CpG island 2763	1098 bp distal
Cpgi2764	CpG island 2764	45 bp proximal
D11Mit175	DNA segment, Chr 11, Massachusetts Institute of Technology 175	135 bp distal
Ebf1	early B cell factor 1	within coordinates
Rr445654	regulatory region 445654	1011 bp distal
Tssr3469	transcription start site region 3469	1090 bp upstream
Tssr3470	transcription start site region 3470	1883 bp upstream
Tssr101039	transcription start site region 101039	1840 bp downstream
Tssr101040	transcription start site region 101040	1792 bp downstream
Tssr101041	transcription start site region 101041	1592 bp downstream
Tssr101042	transcription start site region 101042	1523 bp downstream
Tssr101043	transcription start site region 101043	1504 bp downstream
Tssr101044	transcription start site region 101044	1136 bp downstream
Tssr101045	transcription start site region 101045	1423 bp upstream
Tssr101046	transcription start site region 101046	1455 bp upstream
Tssr101047	transcription start site region 101047	1469 bp upstream
Tssr101048	transcription start site region 101048	1484 bp upstream
Tssr107570	transcription start site region 107570	1658 bp upstream