rs229907881 SNP Detail

Summary

• ID
  rs229907881
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:32736856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGGGATA GGATATGAAA
  TTTGCATTTC AGTGGTATGT TCCATTCATT TGACCTCGCC ACACTTGATA GAATGGAGAT
  CGAATAGTTT TTGATCCCAG ATGATGATGT CTGTGAGTCC AGGGATGCTT GCTGTGTGTG
  GCAAATGACT GCAGAGGTTA AACTCAGTTC TCACATGAAA TTTAAGTAGT AGCGTGAATT
  Y
  GCTGCTCATA TTTTTTGTTT CAGGTGCTCT GACTCGTTGG CTTATCAGTG GGTTTTAGCC
  TGATTTGTGC AGAACGTCAA GTATAATTTA GCCCGCTAAT ATCCAGACAA ACTGGCAGGA
  ATGGATCACT GGCTCCAGAT TGTAGGTATG CTAGCTCTCT GCATGCAGTA ATTTACTGAG
  TCAGCTTGTT GAATAAGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402294769	MGP_WTSI_19_32833946	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229907881					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402294769	MGP_WTSI_19_32833946	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:32736856 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi10762	CpG island 10762			946 bp distal
Gm58496	predicted gene, 58496			1796 bp downstream
Gm58497	predicted gene, 58497			1615 bp downstream
Pten	phosphatase and tensin homolog			Intron
				mRNA-UTR
Rr546565	regulatory region 546565			1742 bp distal
Rr546566	regulatory region 546566			1027 bp proximal
Tssr5485	transcription start site region 5485			1956 bp downstream
Tssr5486	transcription start site region 5486			1761 bp downstream
Tssr5487	transcription start site region 5487			1721 bp downstream
Tssr155992	transcription start site region 155992			1869 bp downstream
Tssr155993	transcription start site region 155993			1819 bp downstream
Tssr155994	transcription start site region 155994			1797 bp downstream
Tssr155995	transcription start site region 155995			1045 bp downstream