rs229916939 SNP Detail

Summary

• ID
  rs229916939
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80063032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTGCAG CCTGAGCCCC
  ATCCCTGCCG AGAGCCTCGT ATTTCCGGCC TGATCCCTAT CTTCTGCAGC CTGAACCCCG
  TATTTCCGGC CTTATATCTC TCTTCTGCAA CCTGAGCCCC GAGTTTCCTA CCTTATACCC
  CTTTTTTGCA GCCTGAACCC GTGTCCTTGC TAAGACCCCG AGTTTCCTGC TGGAGGCCCC
  K
  TATTGACCGG ATACCTCGAC CTCTGCAGTA TCAACCCAAC ATTACACACA TACACACACA
  CACCCCGTGC CGCCTGAATC GTGAATTTAC TGCTTGGTAC CCTGTCTCAG CAGCCTGAAT
  TTATGTCCTT GCTGAAAATT CTGGATTTCT TGCCTTATTT CTTCCCTTTG ACCCCCTCTC
  TGCAGTCTAA GCCCCCAATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381016275	MGP_WTSI_10_79689943	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229916939					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381016275	MGP_WTSI_10_79689943	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80063032 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1860	CpG island 1860	81 bp distal
Pwwp3a	PWWP domain containing 3A, DNA repair factor	within coordinates
Rr402040	regulatory region 402040	606 bp downstream
Rr435156	regulatory region 435156	754 bp distal
Rr435157	regulatory region 435157	within coordinates
Rr435158	regulatory region 435158	618 bp distal
Rr435159	regulatory region 435159	644 bp proximal
Tssr3277	transcription start site region 3277	1124 bp upstream
Tssr94522	transcription start site region 94522	446 bp downstream
Tssr94523	transcription start site region 94523	436 bp downstream
Tssr94524	transcription start site region 94524	415 bp downstream
Tssr94525	transcription start site region 94525	399 bp downstream