rs229922404 SNP Detail

Summary

• ID
  rs229922404
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:89942266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACACAAC CCAAAATAGC
  TTCAGGAAGT CCCTAAAACT GAGCAGATTT GCTAGGTCCC TCCCTGCCAT ACTAAGCAGT
  AAGAGCTGAG TCTCAAATGA GCCAAGATGC AGACTTAGAT GAGACCAGAC CAGCCTCCTA
  GAAGAGGCAG AGACCAACTG AGTCACTTGG AAAGGACAGG CTCCTACAGA CTGTACAGTG
  W
  GCTCCAGGTT CCCAGCTCTT GTGAGCTGTC ACCATGCTGG GGTGGCCTTT GGTGATGCAG
  CTGTCTCTGA GTCATGTCTG CTCTTGTTAA GCAATCCCAA TAAAATTCAT TGGTTCACTT
  ACTTGGACTT TGCTGGTATT TGTACGTTGG TCTGTCATAA GATGTATTGC CTCTCCACAG
  GAAAAGTTTT GTCACACAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397287450	MGP_WTSI_16_90145623	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229922404					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397287450	MGP_WTSI_16_90145623	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:89942266 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8419	CpG island 8419	597 bp distal
Gm10789	predicted gene 10789	within coordinates
Gm56608	predicted gene, 56608	within coordinates
Rr404948	regulatory region 404948	1320 bp downstream
Rr519038	regulatory region 519038	1620 bp distal
Rr519040	regulatory region 519040	1411 bp distal
Rr519041	regulatory region 519041	239 bp distal
Tiam1	T cell lymphoma invasion and metastasis 1	1609 bp upstream
Tssr139275	transcription start site region 139275	1382 bp downstream
Tssr142016	transcription start site region 142016	1603 bp upstream
Tssr142017	transcription start site region 142017	1584 bp upstream
Tssr142018	transcription start site region 142018	1555 bp upstream
Tssr142019	transcription start site region 142019	1521 bp upstream