rs229928972 SNP Detail

Summary

• ID
  rs229928972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:112686763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGTCGT GATATCTCTT
  CACACCAATA GAAACCAAGC TAAGACATCA AAAGTCTTTC AAGCCTGCGG TTATGTTTAG
  CAGGTTACTT GGTGGAAATG GTAGGTCCGC ACTGGTGGGG GTTCCTTACT TGGTCTGTGT
  GTTCTTAGTT TGAACTAAAG GAAGCCTCTC TGCTCAGTGG CCTTAAGTGT CACCCTTACT
  Y
  GATGAAGACT GAAGCTACTA CTAGATCTGC TTTCTGATCC CAATGCTACT GCTCAAGTCA
  CTCAAGCGAG CTTGACCCCT CCTCCCCTTC CAGGAAGCAG CAGCCCACTC CAACCCTGCC
  CTCATGTCTA AGGATACCGA CCCCATGACA GTGCACAGCT GGCAGGGGCC TCAGTCAGAA
  CCCAGGACAC CATTCCTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387391297	MGP_WTSI_12_113958540	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229928972					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387391297	MGP_WTSI_12_113958540	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112686763 () rs orientation: forward

Symbol	Name	Function Class
Cep170b	centrosomal protein 170B	1187 bp upstream
Cpgi5179	CpG island 5179	931 bp proximal
Gm46382	predicted gene, 46382	Intron
Gm59466	predicted gene, 59466	within coordinates
Rr473583	regulatory region 473583	311 bp proximal
Rr473584	regulatory region 473584	1364 bp proximal
Rr473585	regulatory region 473585	1698 bp proximal
Rr473586	regulatory region 473586	1876 bp proximal
Tssr115398	transcription start site region 115398	1073 bp downstream
Tssr115399	transcription start site region 115399	776 bp upstream
Tssr115400	transcription start site region 115400	1175 bp upstream
Tssr115401	transcription start site region 115401	1500 bp upstream
Tssr115402	transcription start site region 115402	1834 bp upstream
Tssr117886	transcription start site region 117886	1363 bp downstream
Tssr117887	transcription start site region 117887	1401 bp downstream
Tssr117888	transcription start site region 117888	1431 bp downstream