rs229933113 SNP Detail

Summary

• ID
  rs229933113
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66056751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACAATGT TCACCCTCAC
  ATGAAAACAG AAAGCCCAGG ATACCTAAAA CAACCCCAAA TAACAGAAGA ACTACTGGAG
  GGTTCATTAT CCCTAATCTC ACGTTGTATT GCAAGAACAA AGGTAATTTT TTAAAAACCC
  ACATAATATT GCCATAAAAA CAAATATGTT GGTGAGAGAG CAAACCACAC AGACCCACGC
  A
  TGAGTCCACA CACCTATGGA CACCATATAG AGATGCAGAC TGTTAAGGAG GTAGCGTTGT
  TAATCAGTGG TGCTGGTCAG ACTGCATGGC TGCATGCAGA AGAGTGCAAA TAGATCCATA
  CTTATTATCT CCCTGCACAG AACTCAACTT CACATAGATG AAAGTCCTCA ACACAAAACC
  AGATACACTG AGTCTGATAG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325658635	CHEV_18_66083334	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229933113					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66056751 () rs orientation: forward

Symbol	Name	Function Class
Gm50118	predicted gene, 50118	1312 bp downstream
Gm50119	predicted gene, 50119	376 bp downstream
Gm58551	predicted gene, 58551	1997 bp upstream
Rr346799	regulatory region 346799	1151 bp distal
Rr346800	regulatory region 346800	650 bp proximal
Rr353052	regulatory region 353052	1350 bp distal
Rr353053	regulatory region 353053	1049 bp proximal
Rr393825	regulatory region 393825	533 bp upstream