rs229936375 SNP Detail

Summary

• ID
  rs229936375
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:153362990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTTACTA AATCATGCAT
  TCATTTTCCT ACCACCTGCT CCTCATCCCG CCCCACCCAG CCATGCCCCG TCACCAGTGC
  GGAGCGGGAG GACCTGCAGC GAAGCCCCGG ACCCCAAAGC GGGCACCCCC ACGGGGCCCG
  GGTGTCCCGG ATTAGAACCG CGGACGACCC CCCACCACCA CGCGCCGGGT GGCGTCGAGC
  M
  GCTACCCCTA CACGCAACTG ATTACAGACA CCCGCCGCCC GTCAGGCCGA GTGAGGAAGA
  GGCCTCCGAG AGCGGCCAGT CTGTGCAAGG AACCCCAGGG CCTAGGGCCA CGGGAGCTCC
  GCTGCGCGAG GCGCCCACGG CCCGTAAATC CGGGTACCCG CCGCGCTGCC CCTCCCCCAC
  ACGCTCGCCC GCCCGCGCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351973717	MGP_WTSI_1_155334374	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229936375					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351973717	MGP_WTSI_1_155334374	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153362990 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi867	CpG island 867			within coordinates
Dhx9	DExH-box helicase 9			Intron
				Noncoding-Transcript-Variant
Rr396394	regulatory region 396394			276 bp upstream
Rr396395	regulatory region 396395			1854 bp upstream
Rr420681	regulatory region 420681			1711 bp distal
Rr420682	regulatory region 420682			within coordinates
Rr420683	regulatory region 420683			991 bp distal
Rr420684	regulatory region 420684			270 bp proximal
Rr420685	regulatory region 420685			354 bp proximal
Rr420686	regulatory region 420686			1676 bp proximal
Tssr9459	transcription start site region 9459			323 bp downstream
Tssr9460	transcription start site region 9460			532 bp upstream
Tssr14270	transcription start site region 14270			395 bp downstream
Tssr14271	transcription start site region 14271			427 bp downstream
Tssr14272	transcription start site region 14272			440 bp downstream