rs229941862 SNP Detail

Summary

• ID
  rs229941862
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:70600171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGCGGCG CGCGTCCCGG
  CGACGGCGGG AAGGGTGCTG GGCGCGCCCC AGCCCGGGAG CGACTCCGCA GGGAGCGGCC
  GTGCGGCTGG GGACAGAGGC GCGGGCAAAG TTCGCGGGAA GGCCGGGCCG GACACGGTGC
  GGGTCCGCGG GCTGAGCCGG TGGCTCTGCG TGAACATGGC CGTCGCGGAG CGCCCGGGGG
  Y
  GGGGGGGCTG GGGGCAGGTG CCGCCTGCGC GGCGGCGGGA GGAGTACGGT TAGTGCGGAC
  TCAGGCGAGG CCGCCAAGGG AGCTGGCGGC AGGCTCTGCC GCGGTGCTGG ACAGCATTCG
  GGGCCGGGGG CGCTGCCGCG GGCCCCGCTG CGCGGAGCGT CATGGCTGCA CGGGCGCCTT
  TGTTATCCCG AAGAGTGCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403745394	MGP_WTSI_X_68809740	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs229941862					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403745394	MGP_WTSI_X_68809740	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:70600171 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22757	CpG island 22757	within coordinates
Gm61711	predicted gene, 61711	614 bp upstream
Hmgb3	high mobility group box 3	within coordinates
Rr406104	regulatory region 406104	597 bp downstream
Rr691784	regulatory region 691784	565 bp distal
Rr691785	regulatory region 691785	within coordinates
Tssr161165	transcription start site region 161165	543 bp downstream
Tssr161166	transcription start site region 161166	524 bp downstream
Tssr161167	transcription start site region 161167	494 bp downstream
Tssr161168	transcription start site region 161168	223 bp downstream
Tssr161169	transcription start site region 161169	309 bp upstream