rs229945680 SNP Detail

Summary

• ID
  rs229945680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:112065377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGAAGAG TGAATAAATT
  TCCGGAATAC CGCCCACCCG CTAGCGACTA TACATCCTAC TTTCCGACAG CGTAGGTCAC
  CAGCCAAGAT AGCCCATTCT AGCTTCCTAC CCCCAGCTGA GAGCAAGGCA TTGGATTCTG
  GCCTTCTTGG CTGGCTTGTT ATTAATGGGT AGCAAAATTA TAGTCGTGCA CTTCTGTGTG
  Y
  AACTGCCAAA GCCCATTTTA ACAATATCCA ATACCGGAGC TTCTGAGATG CAGACAGCGA
  GTTAAGTGTG AATCTGCTGC AATGCACAAT ATATTGACAA CAAAAGCTTA GCAGTTGGTG
  ATTAGTAACC TCATGAACAA ACCACAAATA TATAACTACC ATAAAATATG CCACGAAAAT
  CTCTTCTTTT ATTTATTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378949018	MGP_WTSI_9_112138813	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229945680					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378949018	MGP_WTSI_9_112138813	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:112065377 () rs orientation: forward

Symbol	Name	Function Class
2900079G21Rik	RIKEN cDNA 2900079G21 gene	within coordinates
Arpp21	cyclic AMP-regulated phosphoprotein, 21	371 bp upstream
Cpgi22409	CpG island 22409	546 bp distal
Gm68368	predicted gene, 68368	792 bp upstream
Rr687421	regulatory region 687421	1976 bp distal
Rr687422	regulatory region 687422	1302 bp distal
Rr687423	regulatory region 687423	302 bp distal
Tssr87518	transcription start site region 87518	1996 bp downstream
Tssr91805	transcription start site region 91805	1690 bp upstream
Tssr91806	transcription start site region 91806	1665 bp upstream
Tssr91807	transcription start site region 91807	1487 bp upstream
Tssr91808	transcription start site region 91808	1451 bp upstream
Tssr91809	transcription start site region 91809	1406 bp upstream
Tssr91810	transcription start site region 91810	1342 bp upstream
Tssr91811	transcription start site region 91811	1113 bp upstream
Tssr91812	transcription start site region 91812	807 bp upstream
Tssr91813	transcription start site region 91813	773 bp upstream
Tssr91814	transcription start site region 91814	467 bp upstream
Tssr91815	transcription start site region 91815	444 bp upstream
Tssr91816	transcription start site region 91816	415 bp upstream
Tssr91817	transcription start site region 91817	398 bp upstream
Tssr91818	transcription start site region 91818	376 bp upstream
Tssr91819	transcription start site region 91819	363 bp upstream
Tssr91820	transcription start site region 91820	334 bp upstream