rs229947900 SNP Detail

Summary

• ID
  rs229947900
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72866714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAGAGGA GAAACAACAC
  TGATGTGGTC TGTTTGGCTT TGTGCAGACA ACAGGAGACC ACACATAGTC AAATAGAGAA
  GACCAGAAAC GCCAGCAGGC TTGGACAAGA CCACCCCCAA CCTGGCCCTC CATGCCCACC
  CTCTCTTGCA CATTACCTCT TATTCTTTCT AATAGAGAAG GTAAGATCAC AGCAAAAATT
  Y
  TGGGCTCCCG AGGCCACCTC AATACCACTA CACTACTATG ATTGACACAA TCTCCCCTTC
  TACTCCCGCC ACGTTCCTGA AGGTTTTTCC TCTATTCATC CAGGAACCTA CAGGTTCTCC
  CCCAGCCAAC ACCTGCGCGC ACTAATTCCC TGGTTCTGAT CAACAAGTTC AATAGCTGGG
  GCACAAGTCA CTAGACTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403776360	MGP_WTSI_X_71068447	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229947900					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403776360	MGP_WTSI_X_71068447	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72866714 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22781	CpG island 22781	301 bp proximal
Cpgi22782	CpG island 22782	1032 bp proximal
Pdzd4	PDZ domain containing 4	within coordinates
Rr8723	regulatory region 8723	within coordinates
Rr10008	regulatory region 10008	1714 bp distal
Rr395204	regulatory region 395204	945 bp downstream
Tssr163577	transcription start site region 163577	1245 bp downstream
Tssr163578	transcription start site region 163578	1297 bp downstream
Tssr163579	transcription start site region 163579	1327 bp downstream
Tssr163580	transcription start site region 163580	1441 bp downstream
Tssr163581	transcription start site region 163581	1793 bp downstream
Tssr163582	transcription start site region 163582	1830 bp downstream
Tssr163583	transcription start site region 163583	1885 bp downstream