rs229952307 SNP Detail

Summary

• ID
  rs229952307
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142619547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATAGAATG TAGGATAAAG
  GAGGTGAGGA AACTGAGGTT AGGGTTGGGG AGTGTCTTGC TGCATGTGCC TCAGTGAAGG
  CTGTGGACAC TTTGTCAACT GCATTTCTAC ACCAGCCACA TCCTGCAAAG TAGGATGCAA
  GGTGAGGCTA TGAGAACTTG AACATCTCAG TGCAGGACTG TATCAGGCTC TTGTCTCTCA
  R
  TGGCTCTGTG TGGCTCATGC TTAATCAGGA CATGGTTGGT GGATATGGCC AACCCCCTTG
  GCACATAGCT GTTGGTCATG TGGGCTAGGC CTGGGCTTGC TGGTCAAGGC TCTGACCTCT
  TCTTTCCCCT AGTTCTTCAC CTGCCTTGTG ATCCTGTTTG CCTGTGAGGT GGCTGCAGGC
  ATCTGGGGCT TCGTAAACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322473965	CHEV_7_150251715	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229952307					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142619547 () rs orientation: forward

Symbol	Name	Function Class
Cd81	CD81 antigen	within coordinates
Tssr70273	transcription start site region 70273	851 bp downstream
Tssr70274	transcription start site region 70274	833 bp downstream
Tssr70275	transcription start site region 70275	47 bp downstream
Tssr70276	transcription start site region 70276	16 bp downstream
Tssr70277	transcription start site region 70277	123 bp upstream
Tssr70278	transcription start site region 70278	920 bp upstream
Tssr70279	transcription start site region 70279	1555 bp upstream
Tssr70280	transcription start site region 70280	1591 bp upstream
Tssr70281	transcription start site region 70281	1725 bp upstream