rs229955239 SNP Detail

Summary

• ID
  rs229955239
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:45226046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCTCTTA ACCTCAGTTT
  GGTGAGTTCC TGTTACCCCA GTCTTATTAA ACTGTGCTGG TTCCCAGCCT TCTGCTAGGG
  CTAAAGGCTT CAGAGCTGAA GTCAGAGGCA CTGCAACTTC CAACCCATAG GAAGGAAGAC
  CTTATGGGCC AGCTCAGGGT GAGCGCTGGG AACGCCCCCA GGTCCCTTCT AGAGCCCTGT
  M
  AGTGTGTGTC TGCCCTGCCT GGCCCCACGG CAGCAGCTCG CAAGCAATCT AAATTGCTTT
  CCTGGATTCC ACTACTGGAC TTGCCCCCTG AAGGCGCTGG AGGGAGCAGC TGCTCTGGCA
  AGCACCCCCT GCTAGGGCAG GTGAGGCACA GAAGCACCGA GAGCGACCGG ATATTGTAGT
  GAAGAGGCCA CTGTACGTAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390953896	MGP_WTSI_14_45608264	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229955239					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390953896	MGP_WTSI_14_45608264	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:45226046 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6357	CpG island 6357	136 bp proximal
Gm17173	predicted gene 17173	within coordinates
Gm49364	predicted gene, 49364	within coordinates
Ptger2	prostaglandin E receptor 2 (subtype EP2)	within coordinates
Rr491040	regulatory region 491040	384 bp distal
Rr491041	regulatory region 491041	1255 bp proximal
Tssr4380	transcription start site region 4380	179 bp downstream
Tssr125199	transcription start site region 125199	411 bp downstream
Tssr125200	transcription start site region 125200	386 bp downstream
Tssr125201	transcription start site region 125201	117 bp downstream
Tssr125202	transcription start site region 125202	within coordinates
Tssr125203	transcription start site region 125203	64 bp upstream
Tssr125204	transcription start site region 125204	307 bp upstream
Tssr128221	transcription start site region 128221	1084 bp downstream
Tssr128222	transcription start site region 128222	1261 bp downstream
Tssr128223	transcription start site region 128223	1313 bp downstream