rs229957882 SNP Detail

Summary

• ID
  rs229957882
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:18677209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGGCCAGC GCCTCCCAGA
  CCGTGCGAGA GGCCGGCGCG TCCCGCCCGA GGCCCGCAGG GCGGCTGAGA CGAGAGGCCC
  AGCCGCCGCC CGAGCTTCAC CCGAACCCTC CCGAACCTCC CCGAGGCGTC GCCCGAACCT
  CTCCGAACCG TCCCGAGCCG TCGCCGAACC TCCCCGAGCC GCCCCGCCGC GGGTGCGCGC
  R
  CCCGATCAGC TGGGCGCGCG CCCCGAGTCA CGTGGTGTGC GTGTCGAAGG TCACGGCGCG
  CTCACAATGG AGCTCTCGGA GTCTGTGCAA AGAGGCATCC AGACGCTGGC GGATCCCGGT
  TCCTTTGACT CCAACGCCTT CGCGCTTCTC CTCCGGGCGG CTTTCCAGAG CCTGCTGGAC
  GCCCGGGCGG ACGAGGCCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353255549	MGP_WTSI_2_18594025	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	A	A	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229957882					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	A	A	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353255549	MGP_WTSI_2_18594025	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:18677209 () rs orientation: forward

Symbol	Name	Function Class
Commd3	COMM domain containing 3	37 bp upstream
Cpgi11239	CpG island 11239	within coordinates
Rr372858	regulatory region 372858	within coordinates
Rr552335	regulatory region 552335	1046 bp distal
Rr552336	regulatory region 552336	24 bp distal
Rr552337	regulatory region 552337	within coordinates
Tssr411	transcription start site region 411	130 bp downstream
Tssr16385	transcription start site region 16385	19 bp upstream
Tssr16386	transcription start site region 16386	95 bp upstream