rs229958142 SNP Detail

Summary

• ID
  rs229958142
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165468397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTGTGAG GCTCTGACTA
  AGTGAACGTG GGAACAGTTG ATCCCATTTC AAAACAGGAC CATGGGCCTT AGATGACCAG
  CTCCATTCAG AGGAACAACC AGAGAGAGGA GCAGAGACGT GCTCCAAGAG ACAGAGGAGG
  CACAGAGGAG ACACCACCAG CAGTGTCCCC AGGACCAGCA AAGAAGGCGA CTTTCCCTGA
  R
  CCTGAGGACA GCTGAGAGGG AGAAAGAGTC CGAGCCCAGG AGCAGTGTTG GTGTGAAGGA
  ACTGCCTGAG CAGAGGCCTA AAGGCAGTTT GTTGTGCATT GGAAGGAGAG AGGCCACCAG
  GGCTAAGAGG GACACAGAGG TGGCCAACAC TGGTGTCCAG AGCACGGCCA AATTCACACC
  AAGTGCTGGA TAGGAAGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320608505	CHEV_2_165451977	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229958142					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165468397 () rs orientation: forward

Symbol	Name	Function Class
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569965	regulatory region 569965	408 bp proximal
Rr569966	regulatory region 569966	1471 bp proximal
Rr569967	regulatory region 569967	1585 bp proximal