rs229958405 SNP Detail

Summary

• ID
  rs229958405
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131803307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATCAAAC CAAGTCTGGG
  ACCCAAAAGT GTGTCCATTA CCTGGAGTTC TGATTTCTCT TTTGCCTGCT TTGTCCCTCT
  TCTCAGTGGC TTCCTCTCCC AATGATCTGC CCCCATCAGC CCTGGAAGAG GTCTATGTAG
  TCAATGGCCT AAGACCCCTC CTCTTCCTCG CATTTCAGAC CTGCCCTTGC TCACATAGTG
  M
  CAAGCAAGGT CAGGAAGCTG GCTGACTCCC AGCATGGACT CATCCTAACT AAACTACCCC
  AGAATTTCAA AAGCTCTTCA TGAGATTAAG GCCAAATCTG CCTTGGGATT CCCACCTACA
  GAGGACAAAC ATAATCCCCC TTTTATTCAT AGGAATCAGA GAGTCAAATC CTAAAGCCAT
  GGAGTATTCA CCATGCCAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363286864	MGP_WTSI_4_131631911	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229958405					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363286864	MGP_WTSI_4_131631911	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131803307 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14949	CpG island 14949	432 bp distal
Epb41	erythrocyte membrane protein band 4.1	675 bp upstream
Gm10300	predicted gene 10300	within coordinates
Rr1070	regulatory region 1070	within coordinates
Rr600864	regulatory region 600864	1289 bp distal
Rr600865	regulatory region 600865	715 bp distal
Rr600866	regulatory region 600866	185 bp distal
Rr600867	regulatory region 600867	816 bp proximal
Tssr39361	transcription start site region 39361	387 bp downstream
Tssr43633	transcription start site region 43633	705 bp upstream
Tssr43634	transcription start site region 43634	658 bp upstream
Tssr43635	transcription start site region 43635	566 bp upstream