rs229960043 SNP Detail

Summary

• ID
  rs229960043
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140429069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCC CTTCCCCCCC GAGAAAGGTT
  W
  AAAAAAAAAA AAAAGACGCT GGGGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	NZW/LacJ	QSi3/Ianm	SEA/GnJ	ST/bJ	SWR/J
ss640633582	FVB_NJ_4_140257673	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	T	A	T	A	A	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	NZW/LacJ	QSi3/Ianm	SEA/GnJ	ST/bJ	SWR/J
rs229960043					SNP	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	T	A	T	A	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss640633582	FVB_NJ_4_140257673	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140429069 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15194	CpG island 15194	1779 bp distal
Cpgi15195	CpG island 15195	within coordinates
Gm69527	predicted gene, 69527	488 bp upstream
Gm69529	predicted gene, 69529	1288 bp downstream
Rcc2	regulator of chromosome condensation 2	within coordinates
Rr377298	regulatory region 377298	34 bp downstream
Rr603517	regulatory region 603517	1875 bp distal
Rr603518	regulatory region 603518	1207 bp distal
Rr603519	regulatory region 603519	499 bp distal
Rr603520	regulatory region 603520	275 bp distal
Rr603521	regulatory region 603521	327 bp distal
Tssr39970	transcription start site region 39970	1876 bp downstream
Tssr39971	transcription start site region 39971	1803 bp downstream
Tssr39972	transcription start site region 39972	1783 bp downstream
Tssr39973	transcription start site region 39973	1760 bp downstream
Tssr39974	transcription start site region 39974	1412 bp downstream
Tssr39975	transcription start site region 39975	1273 bp downstream
Tssr39976	transcription start site region 39976	1229 bp downstream
Tssr39977	transcription start site region 39977	1145 bp downstream
Tssr39978	transcription start site region 39978	321 bp downstream
Tssr39979	transcription start site region 39979	295 bp downstream
Tssr39980	transcription start site region 39980	249 bp downstream
Tssr39981	transcription start site region 39981	237 bp downstream
Tssr39982	transcription start site region 39982	210 bp downstream
Tssr39983	transcription start site region 39983	139 bp downstream
Tssr39984	transcription start site region 39984	75 bp upstream
Tssr39985	transcription start site region 39985	137 bp upstream
Tssr39986	transcription start site region 39986	178 bp upstream
Tssr39987	transcription start site region 39987	323 bp upstream
Tssr39988	transcription start site region 39988	419 bp upstream
Tssr39989	transcription start site region 39989	458 bp upstream
Tssr44272	transcription start site region 44272	1935 bp upstream
Tssr44273	transcription start site region 44273	669 bp upstream
Tssr44274	transcription start site region 44274	640 bp downstream
Tssr44275	transcription start site region 44275	1908 bp downstream