rs229963899 SNP Detail

Summary

• ID
  rs229963899
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11683887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGACCAC AGGCAGTGAA
  GAAGCTGTGC TTGGTTGCAA GCAATTCCTG AGAACAAACA GCACCCCGAA CCTCCTATCT
  GTCTCCCCAA GCAAGGTAAG CTTGTCCTTA CAAAGGACTG GTCACTTCAA TAAACACAGA
  TTCTCTGAGT TTTTATTGAT CGGCAGGCTG CAAAACTTGC ACAGTCCACA GCAAACAGAC
  R
  TTAGGACAGT GTTAGAAAGT GATGGCTGGC CAGGCGGTGG TGGCGCACGC CTTTAATCCC
  AGCACTCAGG AGGCAGAGAC CGGCGGATTT CTGAGTTCCA GGCCAGCCTG GTCTACAAAG
  TTAGTTCCAG GACAGCCATG GCTATACAGA GAAACCCTGT CTCGGAAAAC CAAACCAAAC
  CAAACCAAAC CAAAAAGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322492717	CHEV_8_11633887	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229963899					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11683887 () rs orientation: forward

Symbol	Name	Function Class
Ankrd10	ankyrin repeat domain 10	within coordinates
Cpgi20087	CpG island 20087	598 bp proximal
Gm64331	predicted gene, 64331	1483 bp upstream
Mir7238	microRNA 7238	1807 bp downstream
Rr186041	regulatory region 186041	within coordinates
Rr400761	regulatory region 400761	1831 bp upstream
Tssr80389	transcription start site region 80389	1139 bp downstream
Tssr80390	transcription start site region 80390	1165 bp downstream
Tssr80391	transcription start site region 80391	1754 bp downstream
Tssr80392	transcription start site region 80392	1806 bp downstream
Tssr80393	transcription start site region 80393	1842 bp downstream
Tssr80394	transcription start site region 80394	1858 bp downstream