rs229966342 SNP Detail

Summary

• ID
  rs229966342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:121070354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGAAGTT GTTCTGTTTC
  AGAACAAGTG AGACGTCAAA ATAAGAAAAG GGGTGGGTCT CACTGCAGAT ACTTCAGTCT
  TTAAGAGAAG AAATGGTTCC CTGTGGTTAG CAAAAGAGCA GAGCTCAGAC TACCTCTGTT
  CAGAGCCTGA AGCACAAAGT TCTCCAGGGA GAAGAGGAGA CCACACAGCC AACCCCAGGG
  Y
  CTTCTTACCT CCTGGAATGG CCACTCTTCT GGATAGCTTT ATGTCAACTT GACACACGCC
  AGAGTCATCT GAGAGGAGGG AACATCAATT AAGAAAATGC CTCCACACTG TAATTGGTAG
  GGGTGGCCCT AGCCTACAGT GGGTGATGCC ATCTCTGGAC TGGTGGTCAT GGGTTCTATA
  AGAAAATAGA CTGAGCAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324851455	CHEV_14_121232164	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229966342					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:121070354 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6879	CpG island 6879	791 bp distal
Rr287003	regulatory region 287003	954 bp distal
Rr287004	regulatory region 287004	1247 bp proximal
Rr390218	regulatory region 390218	555 bp downstream
Rr404289	regulatory region 404289	842 bp downstream