rs229966790 SNP Detail

Summary

• ID
  rs229966790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:55479367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttatctatt gtaagatatc ttgattattt
  tcacattttg gtaaccatga ataaaactat tataaacatc tttttccctc acgggttttt
  gtgtgagcat agtgtagttg ctggatcaaa tgataagaat atgtttactt ttattagaCA
  Y
  TTTAAGGCTA ACTTTCTCCT TTAAATACAT GTTGATTTCA GTGGGAAAAG AGTATGTTGA
  CCTCAACAAC CATGAGCCTT AAAGCCTGGT CTGTTGCCAA TACTTTATCT CAGCCTTATT
  AGAGGCCAAT AAGGAAAAAT TTCCTTTTCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319728610	CHEV_1_55497052	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229966790					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55479367 () rs orientation: forward

Symbol	Name	Function Class
Gm38056	predicted gene, 38056	696 bp upstream
Plcl1	phospholipase C-like 1	within coordinates